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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PAX9 HGNC:8623 (HGNC)
5083 (Entrez Gene)
167416 (OMIM)
PAX9 (MyGene.info)
HGNC homology
Chr14 q13.3 Chr14:36657568-36677807 (+)
tooth agenesis
P55771 (UniProt | EBI)
NM_006194 (RefSeq)
mouse Pax9 MGI:97493 (MGI)
18511 (Entrez Gene)
Gene Tree
HGNC homology
Chr12 24.53 cM Chr12:56691767-56712707 (+)
tooth agenesis
OTTMUSG00000023206 (VEGA)
OTTMUSP00000026953 (VEGA)
OTTMUST00000056158 (VEGA)
rat Pax9 362741 (Entrez Gene)
Chr6 q23 Q2L4T2 (UniProt | EBI)
NM_001039539 (RefSeq)
chimpanzee PAX9 737458 (Entrez Gene)
Chr14 Q2VL62 (UniProt | EBI)
cattle PAX9 540196 (Entrez Gene)
Chr21 NP_001179298 (RefSeq)
NM_001192369 (RefSeq)
dog PAX9 490654 (Entrez Gene)
Chr8 XP_022277645 (RefSeq)
chicken PAX9 395740 (Entrez Gene)
Chr5 P55166 (UniProt | EBI)
NM_204912 (RefSeq)
zebrafish pax9 30558 (Entrez Gene)
Chr17 NP_571373 (RefSeq)
NM_131298 (RefSeq)
frog, western clawed pax9 100485934 (Entrez Gene)
Chr8 XP_002935394 (RefSeq)
macaque, rhesus PAX9 100429091 (Entrez Gene)
Chr7 Q2VL61 (UniProt | EBI)
NM_001040417 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.12
The Jackson Laboratory