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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PAX2 HGNC:8616 (HGNC)
5076 (Entrez Gene)
167409 (OMIM)
PAX2 (MyGene.info)
HGNC homology
Chr10 q24.31 Chr10:100732940-100829941 (+)
focal segmental glomerulosclerosis 7
renal agenesis
renal coloboma syndrome
Q02962 (UniProt | EBI)
NM_003987 (RefSeq)
mouse Pax2 MGI:97486 (MGI)
18504 (Entrez Gene)
Gene Tree
HGNC homology
Chr19 38.09 cM Chr19:44756045-44837851 (+)
renal coloboma syndrome
OTTMUSG00000037630 (VEGA)
OTTMUSP00000054369 (VEGA)
OTTMUST00000097085 (VEGA)
rat Pax2 293992 (Entrez Gene)
Chr1 q54 NP_001099831 (RefSeq)
NM_001106361 (RefSeq)
chimpanzee PAX2 744540 (Entrez Gene)
Chr10 XP_016774611 (RefSeq)
cattle PAX2 100297382 (Entrez Gene)
Chr26 XP_015325057 (RefSeq)
dog PAX2 609228 (Entrez Gene)
Chr28 XP_013964578 (RefSeq)
chicken PAX2 395574 (Entrez Gene)
Chr6 NP_990124 (RefSeq)
NM_204793 (RefSeq)
zebrafish pax2a 30425 (Entrez Gene)
Chr13 Q90268 (UniProt | EBI)
NM_131184 (RefSeq)
pax2b 60638 (Entrez Gene)
Chr12 NP_571715 (RefSeq)
NM_131640 (RefSeq)
macaque, rhesus PAX2 710687 (Entrez Gene)
Chr9 XP_015003447 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.11
The Jackson Laboratory