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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2926

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human AP3D1 HGNC:568 (HGNC)
8943 (Entrez Gene)
607246 (OMIM)
Chr19 p13.3 Chr19:2100988-2151620 (-)
GRCh38
O14617 (UniProt | EBI)
NM_003938 (RefSeq)
mouse Ap3d1 MGI:107734 (MGI)
11776 (Entrez Gene)
Gene Tree
VISTA-Point
Chr10 39.72 cM Chr10:80706978-80742211 (-)
GRCm38
Hermansky-Pudlak Syndrome 1; HPS1
Hermansky-Pudlak Syndrome 2; HPS2
Storage Pool Platelet Disease
11776 (NCBI Gene Model)
O54774 (UniProt | EBI)
NM_007460 (RefSeq)
rat Ap3d1 314633 (Entrez Gene)
Chr7 q11 NP_001094189 (RefSeq)
NM_001100719 (RefSeq)
chimpanzee AP3D1 455565 (Entrez Gene)
Chr19 XP_001149712 (RefSeq)
rhesus macaque AP3D1 100430853 (Entrez Gene)
Chr19 XP_002801055 (RefSeq)
cattle AP3D1 281023 (Entrez Gene)
Chr7 q15 Q865S1 (UniProt | EBI)
NM_173998 (RefSeq)
dog AP3D1 476750 (Entrez Gene)
Chr20 XP_533956 (RefSeq)
chicken AP3D1 420079 (Entrez Gene)
Chr28 XP_003642902 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory