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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
292

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SMN1 HGNC:11117 (HGNC)
6606 (Entrez Gene)
600354 (OMIM)
Chr5 q13.2 Chr5:70924941-70953012 (+)
GRCh38
Spinal Muscular Atrophy, Type I; SMA1
Spinal Muscular Atrophy, Type II; SMA2
Spinal Muscular Atrophy, Type III; SMA3
Spinal Muscular Atrophy, Type IV; SMA4
Q16637 (UniProt | EBI)
NM_000344 (RefSeq)
SMN2 HGNC:11118 (HGNC)
6607 (Entrez Gene)
601627 (OMIM)
Chr5 q13.2 Chr5:70049523-70077595 (+)
GRCh38
Spinal Muscular Atrophy, Type III; SMA3
Q16637 (UniProt | EBI)
NM_017411 (RefSeq)
mouse Smn1 MGI:109257 (MGI)
20595 (Entrez Gene)
Gene Tree
VISTA-Point
Chr13 52.99 cM Chr13:100124852-100137690 (+)
GRCm38
Spinal Muscular Atrophy, Type I; SMA1
Spinal Muscular Atrophy, Type II; SMA2
Spinal Muscular Atrophy, Type III; SMA3
OTTMUSG00000033496 (VEGA)
OTTMUSP00000045374 (VEGA)
OTTMUST00000084239 (VEGA)
rat Smn1 64301 (Entrez Gene)
Chr2 q12 O35876 (UniProt | EBI)
NM_022509 (RefSeq)
chimpanzee SMN1 461829 (Entrez Gene)
Chr5 XP_001156201 (RefSeq)
rhesus macaque SMN1 677703 (Entrez Gene)
Chr6 NP_001247593 (RefSeq)
NM_001260664 (RefSeq)
cattle SMN1 281492 (Entrez Gene)
Chr20 q14 O18870 (UniProt | EBI)
NM_175701 (RefSeq)
dog SMN 403896 (Entrez Gene)
Chr2 O02771 (UniProt | EBI)
NM_001003226 (RefSeq)
chicken SMN 374025 (Entrez Gene)
ChrZ NP_989530 (RefSeq)
NM_204199 (RefSeq)
zebrafish smn1 30432 (Entrez Gene)
Chr5 Q9W6S8 (UniProt | EBI)
NM_131191 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/12/2014
MGI 5.19
The Jackson Laboratory