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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
285

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SGCD HGNC:10807 (HGNC)
6444 (Entrez Gene)
601411 (OMIM)
Chr5 q33-q34 Chr5:156035139-156767788 (+)
GRCh38
Cardiomyopathy, Dilated, 1L; CMD1L
Muscular Dystrophy, Limb-Girdle, Type 2F; LGMD2F
Q92629 (UniProt | EBI)
NM_000337 (RefSeq)
mouse Sgcd MGI:1346525 (MGI)
24052 (Entrez Gene)
Gene Tree
VISTA-Point
Chr11 28.09 cM Chr11:46896253-47988969 (-)
GRCm38
Cardiomyopathy, Dilated, 1L; CMD1L
Muscular Dystrophy, Limb-Girdle, Type 2F; LGMD2F
OTTMUSG00000005512 (VEGA)
OTTMUSP00000005662 (VEGA)
OTTMUST00000012261 (VEGA)
rat Sgcd 497892 (Entrez Gene)
Chr10 q21 NP_001102499 (RefSeq)
NM_001109029 (RefSeq)
chimpanzee SGCD 462216 (Entrez Gene)
Chr5 XP_001134904 (RefSeq)
rhesus macaque LOC715190 715190 (Entrez Gene)
Chr6 XP_001113209 (RefSeq)
cattle SGCD 517059 (Entrez Gene)
Chr7 NP_001178192 (RefSeq)
NM_001191263 (RefSeq)
dog SGCD 612079 (Entrez Gene)
Chr4 XP_854897 (RefSeq)
chicken SGCD 416251 (Entrez Gene)
Chr13 XP_414572 (RefSeq)
western clawed frog sgcd 100495350 (Entrez Gene)
ChrUN XP_004912845 (RefSeq)
zebrafish sgcd 324961 (Entrez Gene)
Chr21 NP_001001816 (RefSeq)
NM_001001816 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory