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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2736

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CASK HGNC:1497 (HGNC)
8573 (Entrez Gene)
300172 (OMIM)
ChrX p11.4 ChrX:41514934-41923155 (-)
GRCh38
Fg Syndrome 4; FGS4
Mental Retardation and Microcephaly with Pontine and Cerebellar Hypoplasia;
O14936 (UniProt | EBI)
NM_003688 (RefSeq)
mouse Cask MGI:1309489 (MGI)
12361 (Entrez Gene)
Gene Tree
VISTA-Point
ChrX 8.43 cM ChrX:13517080-13851367 (-)
GRCm38
OTTMUSG00000016907 (VEGA)
OTTMUSP00000018374 (VEGA)
OTTMUST00000041028 (VEGA)
rat Cask 29647 (Entrez Gene)
ChrX q12 Q62915 (UniProt | EBI)
NM_022184 (RefSeq)
chimpanzee CASK 100608149 (Entrez Gene)
ChrX XP_009437240 (RefSeq)
rhesus macaque CASK 707428 (Entrez Gene)
ChrX NP_001247939 (RefSeq)
NM_001261010 (RefSeq)
cattle CASK 404149 (Entrez Gene)
ChrX NP_001095951 (RefSeq)
NM_001102481 (RefSeq)
dog CASK 480887 (Entrez Gene)
ChrX XP_850618 (RefSeq)
chicken CASK 418565 (Entrez Gene)
Chr1 XP_416769 (RefSeq)
western clawed frog cask 548958 (Entrez Gene)
ChrUN NP_001016204 (RefSeq)
NM_001016204 (RefSeq)
zebrafish caska 259195 (Entrez Gene)
Chr9 NP_694420 (RefSeq)
NM_152941 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory