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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2735

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PDLIM4 HGNC:16501 (HGNC)
8572 (Entrez Gene)
603422 (OMIM)
Chr5 q31.1 Chr5:132257658-132273454 (+)
GRCh38
Osteoporosis
P50479 (UniProt | EBI)
NM_003687 (RefSeq)
mouse Pdlim4 MGI:1353470 (MGI)
30794 (Entrez Gene)
Gene Tree
VISTA-Point
Chr11 32.13 cM Chr11:54054928-54069014 (-)
GRCm38
OTTMUSG00000005656 (VEGA)
OTTMUSP00000005828 (VEGA)
OTTMUST00000012586 (VEGA)
rat Pdlim4 24915 (Entrez Gene)
Chr10 P36202 (UniProt | EBI)
NM_017062 (RefSeq)
chimpanzee PDLIM4 462048 (Entrez Gene)
Chr5 XP_001163139 (RefSeq)
rhesus macaque PDLIM4 707372 (Entrez Gene)
Chr6 NP_001244732 (RefSeq)
NM_001257803 (RefSeq)
cattle PDLIM4 515410 (Entrez Gene)
Chr7 Q3T005 (UniProt | EBI)
NM_001034491 (RefSeq)
dog PDLIM4 481498 (Entrez Gene)
Chr11 XP_538619 (RefSeq)
chicken PDLIM4 395643 (Entrez Gene)
Chr13 Q9PW72 (UniProt | EBI)
NM_204839 (RefSeq)
zebrafish pdlim4 569404 (Entrez Gene)
Chr21 NP_001036161 (RefSeq)
NM_001042696 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory