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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
26615

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SHROOM4 HGNC:29215 (HGNC)
57477 (Entrez Gene)
300579 (OMIM)
HGNC homology
ChrX p11.22 ChrX:50575534-50814167 (-)
GRCh38.p7
Q9ULL8 (UniProt | EBI)
NM_020717 (RefSeq)
mouse Shroom4 MGI:2685570 (MGI)
208431 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
ChrX 2.85 cM ChrX:6399949-6637454 (+)
GRCm38
208431 (NCBI Gene Model)
Q1W617 (UniProt | EBI)
NM_001040459 (RefSeq)
rat Shroom4 317391 (Entrez Gene)
ChrX q12 NP_001178659 (RefSeq)
NM_001191730 (RefSeq)
chimpanzee SHROOM4 465636 (Entrez Gene)
ChrX XP_024209028 (RefSeq)
cattle SHROOM4 519045 (Entrez Gene)
ChrX XP_010820251 (RefSeq)
dog SHROOM4 612585 (Entrez Gene)
ChrX XP_005641412 (RefSeq)
chicken SHROOM4 777072 (Entrez Gene)
Chr4 XP_015133853 (RefSeq)
macaque, rhesus SHROOM4 694677 (Entrez Gene)
ChrX XP_028698080 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
09/15/2020
MGI 6.15
The Jackson Laboratory