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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
256

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PLOD1 HGNC:9081 (HGNC)
5351 (Entrez Gene)
153454 (OMIM)
Chr1 p36.22 Chr1:11934667-11975542 (+)
GRCh38
Ehlers-Danlos Syndrome, Type VI; EDS6
Q02809 (UniProt | EBI)
NM_000302 (RefSeq)
mouse Plod1 MGI:99907 (MGI)
18822 (Entrez Gene)
Gene Tree
VISTA-Point
Chr4 78.57 cM Chr4:147909753-147936767 (-)
GRCm38
Ehlers-Danlos Syndrome, Type VI; EDS6
OTTMUSG00000010675 (VEGA)
OTTMUSP00000011428 (VEGA)
OTTMUST00000024908 (VEGA)
rat Plod1 116552 (Entrez Gene)
Chr5 q36 Q63321 (UniProt | EBI)
NM_053827 (RefSeq)
chimpanzee PLOD1 457956 (Entrez Gene)
Chr1 XP_001142788 (RefSeq)
cattle PLOD1 281409 (Entrez Gene)
Chr16 O77588 (UniProt | EBI)
NM_174148 (RefSeq)
dog PLOD1 487440 (Entrez Gene)
Chr2 NP_001271371 (RefSeq)
NM_001284442 (RefSeq)
chicken PLOD1 419485 (Entrez Gene)
Chr21 P24802 (UniProt | EBI)
NM_001005618 (RefSeq)
western clawed frog plod1 779793 (Entrez Gene)
ChrUN NP_001072340 (RefSeq)
NM_001078872 (RefSeq)
zebrafish plod1a 777635 (Entrez Gene)
Chr8 NP_001071210 (RefSeq)
NM_001077742 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory