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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2538

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human VIM HGNC:12692 (HGNC)
7431 (Entrez Gene)
193060 (OMIM)
Vimentin (MyGene.info)
HGNC homology
Chr10 p13 Chr10:17227935-17237593 (+)
GRCh38.p7
cataract 30
P08670 (UniProt | EBI)
NM_003380 (RefSeq)
mouse Vim MGI:98932 (MGI)
22352 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr2 10.04 cM Chr2:13574311-13582826 (+)
GRCm38
cataract 30
22352 (NCBI Gene Model)
P20152 (UniProt | EBI)
NM_011701 (RefSeq)
rat Vim 81818 (Entrez Gene)
Chr17 q12.3 P31000 (UniProt | EBI)
NM_031140 (RefSeq)
chimpanzee VIM 493952 (Entrez Gene)
Chr10 Q5R1W8 (UniProt | EBI)
NM_001009148 (RefSeq)
cattle VIM 280955 (Entrez Gene)
Chr13 q16-q17 P48616 (UniProt | EBI)
NM_173969 (RefSeq)
dog VIM 477991 (Entrez Gene)
Chr2 NP_001273952 (RefSeq)
NM_001287023 (RefSeq)
chicken VIM 420519 (Entrez Gene)
Chr2 P09654 (UniProt | EBI)
NM_001048076 (RefSeq)
zebrafish vim 140599 (Entrez Gene)
Chr24 NP_571947 (RefSeq)
NM_131872 (RefSeq)
frog, western clawed vim 496727 (Entrez Gene)
Chr6 NP_001128275 (RefSeq)
NM_001134803 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory