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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2478

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human TRPC1 HGNC:12333 (HGNC)
7220 (Entrez Gene)
602343 (OMIM)
Chr3 q23 Chr3:142724424-142807888 (+)
GRCh38
P48995 (UniProt | EBI)
NM_003304 (RefSeq)
mouse Trpc1 MGI:109528 (MGI)
22063 (Entrez Gene)
Gene Tree
VISTA-Point
Chr9 50.2 cM Chr9:95705082-95750375 (-)
GRCm38
OTTMUSG00000047293 (VEGA)
OTTMUSP00000067131 (VEGA)
OTTMUST00000122275 (VEGA)
rat Trpc1 89821 (Entrez Gene)
Chr8 q31 Q9QX01 (UniProt | EBI)
NM_053558 (RefSeq)
chimpanzee TRPC1 460747 (Entrez Gene)
Chr3 XP_003310079 (RefSeq)
rhesus macaque TRPC1 714334 (Entrez Gene)
Chr2 NP_001247866 (RefSeq)
NM_001260937 (RefSeq)
cattle TRPC1 282100 (Entrez Gene)
Chr1 O18784 (UniProt | EBI)
NM_174476 (RefSeq)
dog TRPC1 485698 (Entrez Gene)
Chr23 XP_542818 (RefSeq)
chicken TRPC1 424776 (Entrez Gene)
Chr9 NP_001004409 (RefSeq)
NM_001004409 (RefSeq)
western clawed frog trpc1 100497011 (Entrez Gene)
ChrUN XP_002937145 (RefSeq)
zebrafish trpc1 570841 (Entrez Gene)
Chr24 NP_001185590 (RefSeq)
NM_001198661 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory