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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
23665

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SMCHD1 HGNC:29090 (HGNC)
23347 (Entrez Gene)
614982 (OMIM)
Chr18 p11.32 Chr18:2655887-2805017 (+)
GRCh38
Facioscapulohumeral Muscular Dystrophy 2; FSHD2
A6NHR9 (UniProt | EBI)
NM_015295 (RefSeq)
mouse Smchd1 MGI:1921605 (MGI)
74355 (Entrez Gene)
Gene Tree
VISTA-Point
Chr17 41.87 cM Chr17:71344489-71475343 (-)
GRCm38
OTTMUSG00000033170 (VEGA)
OTTMUSP00000044523 (VEGA)
OTTMUST00000082972 (VEGA)
rat Smchd1 316732 (Entrez Gene)
Chr9 q38 XP_001056555 (RefSeq)
chimpanzee SMCHD1 455319 (Entrez Gene)
Chr18 XP_512045 (RefSeq)
rhesus macaque SMCHD1 695870 (Entrez Gene)
Chr18 NP_001245095 (RefSeq)
NM_001258166 (RefSeq)
cattle SMCHD1 537894 (Entrez Gene)
Chr24 NP_001193329 (RefSeq)
NM_001206400 (RefSeq)
dog SMCHD1 490535 (Entrez Gene)
Chr7 XP_005623085 (RefSeq)
chicken SMCHD1 421057 (Entrez Gene)
Chr2 XP_419144 (RefSeq)
western clawed frog smchd1 100380032 (Entrez Gene)
ChrUN XP_002938954 (RefSeq)
zebrafish smchd1 570784 (Entrez Gene)
Chr7 XP_699397 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory