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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2353

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SPTAN1 HGNC:11273 (HGNC)
6709 (Entrez Gene)
182810 (OMIM)
Chr9 q34.11 Chr9:128552558-128633665 (+)
GRCh38
Epileptic Encephalopathy, Early Infantile, 5; EIEE5
Q13813 (UniProt | EBI)
NM_003127 (RefSeq)
mouse Sptan1 MGI:98386 (MGI)
20740 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 20.93 cM Chr2:29965560-30031451 (+)
GRCm38
OTTMUSG00000016728 (VEGA)
OTTMUSP00000018116 (VEGA)
OTTMUST00000040532 (VEGA)
rat Sptan1 64159 (Entrez Gene)
Chr3 p12 P16086 (UniProt | EBI)
NM_171983 (RefSeq)
chimpanzee SPTAN1 464771 (Entrez Gene)
Chr9 XP_003312345 (RefSeq)
rhesus macaque SPTAN1 722610 (Entrez Gene)
Chr15 NP_001252953 (RefSeq)
NM_001266024 (RefSeq)
cattle SPTAN1 540108 (Entrez Gene)
Chr11 NP_001107628 (RefSeq)
NM_001114156 (RefSeq)
dog SPTAN1 403484 (Entrez Gene)
Chr9 XP_537823 (RefSeq)
chicken SPTAN1 374234 (Entrez Gene)
Chr17 P07751 (UniProt | EBI)
NM_001042538 (RefSeq)
western clawed frog sptan1 100036647 (Entrez Gene)
ChrUN NP_001090674 (RefSeq)
NM_001097205 (RefSeq)
zebrafish spna2 553383 (Entrez Gene)
Chr21 NP_001091958 (RefSeq)
NM_001098488 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory