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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
23401

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PCDH15 HGNC:14674 (HGNC)
65217 (Entrez Gene)
605514 (OMIM)
Chr10 q21.1 Chr10:53802771-54801291 (-)
GRCh38
Deafness, Autosomal Recessive 23; DFNB23
Usher Syndrome, Type ID; USH1D
Usher Syndrome, Type IF; USH1F
Q96QU1 (UniProt | EBI)
NM_033056 (RefSeq)
mouse Pcdh15 MGI:1891428 (MGI)
11994 (Entrez Gene)
VISTA-Point
Chr10 37.43 cM Chr10:73099342-74646314 (+)
GRCm38
Usher Syndrome, Type IF; USH1F
OTTMUSG00000021142 (VEGA)
OTTMUSP00000023313 (VEGA)
OTTMUST00000050062 (VEGA)
rat Pcdh15 690865 (Entrez Gene)
Chr20 p12 NP_001258306 (RefSeq)
NM_001271377 (RefSeq)
chimpanzee PCDH15 450468 (Entrez Gene)
Chr10 XP_507798 (RefSeq)
rhesus macaque PCDH15 702413 (Entrez Gene)
Chr9 XP_001098443 (RefSeq)
cattle LOC100140108 100140108 (Entrez Gene)
Chr26 XP_005193412 (RefSeq)
NM_001206805 (RefSeq)
dog PCDH15 609280 (Entrez Gene)
Chr26 XP_003433494 (RefSeq)
chicken PCDH15 423644 (Entrez Gene)
Chr6 Q0ZM14 (UniProt | EBI)
NM_001044654 (RefSeq)
western clawed frog pcdh15 100494111 (Entrez Gene)
ChrUN XP_004916517 (RefSeq)
zebrafish pcdh15a 368476 (Entrez Gene)
Chr10 NP_001012500 (RefSeq)
NM_001012482 (RefSeq)
pcdh15b 503521 (Entrez Gene)
Chr12 NP_001012504 (RefSeq)
NM_001012486 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory