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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2310

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SMARCB1 HGNC:11103 (HGNC)
6598 (Entrez Gene)
601607 (OMIM)
Chr22 q11.23 Chr22:23786963-23834518 (+)
GRCh38
Mental Retardation, Autosomal Dominant 15; MRD15
Rhabdoid Tumor Predisposition Syndrome 1; RTPS1
Schwannomatosis 1; SWNTS1
Q12824 (UniProt | EBI)
NM_001007468 (RefSeq)
mouse Smarcb1 MGI:1328366 (MGI)
20587 (Entrez Gene)
Gene Tree
VISTA-Point
Chr10 38.61 cM Chr10:75896769-75921617 (-)
GRCm38
Rhabdoid Tumor Predisposition Syndrome 1; RTPS1
OTTMUSG00000031849 (VEGA)
OTTMUSP00000042073 (VEGA)
OTTMUST00000078972 (VEGA)
rat Smarcb1 361825 (Entrez Gene)
Chr20 p12 NP_001020899 (RefSeq)
NM_001025728 (RefSeq)
chimpanzee SMARCB1 458702 (Entrez Gene)
Chr22 XP_001169668 (RefSeq)
rhesus macaque SMARCB1 699190 (Entrez Gene)
Chr10 NP_001244817 (RefSeq)
NM_001257888 (RefSeq)
cattle SMARCB1 537412 (Entrez Gene)
Chr17 Q5BIN2 (UniProt | EBI)
NM_001040557 (RefSeq)
dog SMARCB1 486407 (Entrez Gene)
Chr26 XP_543533 (RefSeq)
chicken MMP11 769489 (Entrez Gene)
Chr15 Q5ZK40 (UniProt | EBI)
NM_001039255 (RefSeq)
western clawed frog smarcb1 448543 (Entrez Gene)
ChrUN Q6DFM1 (UniProt | EBI)
NM_001006818 (RefSeq)
zebrafish smarcb1a 799716 (Entrez Gene)
Chr8 Q5U379 (UniProt | EBI)
NM_001007296 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory