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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
22949

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SHANK1 HGNC:15474 (HGNC)
50944 (Entrez Gene)
604999 (OMIM)
SHANK1 (MyGene.info)
HGNC homology
Chr19 q13.33 Chr19:50659257-50719779 (-)
GRCh38.p7
Q9Y566 (UniProt | EBI)
NM_016148 (RefSeq)
mouse Shank1 MGI:3613677 (MGI)
243961 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr7 28.83 cM Chr7:44310253-44360572 (+)
GRCm38
ENSMUSG00000038738 (Ensembl Gene Model)
ENSMUSP00000103571 (Ensembl)
ENSMUST00000107938 (Ensembl)
rat Shank1 78957 (Entrez Gene)
Chr1 q22 Q9WV48 (UniProt | EBI)
NM_031751 (RefSeq)
cattle SHANK1 518970 (Entrez Gene)
Chr18 XP_024834507 (RefSeq)
dog SHANK1 484359 (Entrez Gene)
Chr1 XP_038383994 (RefSeq)
frog, western clawed shank1 100486091 (Entrez Gene)
Chr7 XP_031762025 (RefSeq)
macaque, rhesus SHANK1 719673 (Entrez Gene)
Chr19 XP_014980154 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
02/23/2021
MGI 6.16
The Jackson Laboratory