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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2291

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SLC6A6 HGNC:11052 (HGNC)
6533 (Entrez Gene)
186854 (OMIM)
Chr3 p25.1 Chr3:14402576-14489349 (+)
GRCh38
P31641 (UniProt | EBI)
NM_003043 (RefSeq)
mouse Slc6a6 MGI:98488 (MGI)
21366 (Entrez Gene)
Gene Tree
VISTA-Point
Chr6 40.73 cM Chr6:91684067-91759063 (+)
GRCm38
Retinitis Pigmentosa; RP
21366 (NCBI Gene Model)
O35316 (UniProt | EBI)
NM_009320 (RefSeq)
rat Slc6a6 29464 (Entrez Gene)
Chr4 q34 P31643 (UniProt | EBI)
NM_017206 (RefSeq)
chimpanzee SLC6A6 460196 (Entrez Gene)
Chr3 XP_001157641 (RefSeq)
rhesus macaque SLC6A6 701172 (Entrez Gene)
Chr11 NP_001253822 (RefSeq)
NM_001266893 (RefSeq)
cattle SLC6A6 282366 (Entrez Gene)
Chr22 Q9MZ34 (UniProt | EBI)
NM_174610 (RefSeq)
dog SLC6A6 404000 (Entrez Gene)
Chr20 Q00589 (UniProt | EBI)
NM_001003311 (RefSeq)
chicken SLC6A6 416041 (Entrez Gene)
Chr12 NP_001025771 (RefSeq)
NM_001030600 (RefSeq)
western clawed frog slc6a6 100494063 (Entrez Gene)
ChrUN XP_002938268 (RefSeq)
zebrafish slc6a6a 556480 (Entrez Gene)
Chr8 NP_001119858 (RefSeq)
NM_001126386 (RefSeq)
slc6a6b 569098 (Entrez Gene)
Chr22 NP_001032750 (RefSeq)
NM_001037661 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory