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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
229

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human NPHP1 HGNC:7905 (HGNC)
4867 (Entrez Gene)
607100 (OMIM)
Chr2 q13 Chr2:110123336-110205062 (-)
GRCh38
Joubert Syndrome 4; JBTS4
Nephronophthisis 1; NPHP1
Senior-Loken Syndrome 1; SLSN1
O15259 (UniProt | EBI)
NM_000272 (RefSeq)
mouse Nphp1 MGI:1858233 (MGI)
53885 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 62.09 cM Chr2:127740732-127788897 (-)
GRCm38
OTTMUSG00000016097 (VEGA)
OTTMUSP00000017218 (VEGA)
OTTMUST00000038456 (VEGA)
rat Nphp1 296136 (Entrez Gene)
Chr3 q36 NP_001099976 (RefSeq)
NM_001106506 (RefSeq)
chimpanzee NPHP1 459483 (Entrez Gene)
Chr2A XP_003309231 (RefSeq)
rhesus macaque NPHP1 696218 (Entrez Gene)
Chr13 XP_002799426 (RefSeq)
cattle NPHP1 505421 (Entrez Gene)
Chr11 NP_001098802 (RefSeq)
NM_001105332 (RefSeq)
dog NPHP1 403780 (Entrez Gene)
Chr17 Q9TU19 (UniProt | EBI)
NM_001195841 (RefSeq)
chicken NPHP1 421223 (Entrez Gene)
Chr3 NP_001186358 (RefSeq)
NM_001199429 (RefSeq)
western clawed frog nphp1 100494715 (Entrez Gene)
ChrUN XP_002940386 (RefSeq)
zebrafish nphp1 100002391 (Entrez Gene)
Chr17 NP_001070638 (RefSeq)
NM_001077170 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory