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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2271

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SFTPC HGNC:10802 (HGNC)
6440 (Entrez Gene)
178620 (OMIM)
Chr8 p21 Chr8:22158721-22164479 (+)
GRCh38
Pulmonary Fibrosis, Idiopathic; IPF
Surfactant Metabolism Dysfunction, Pulmonary, 2; SMDP2
P11686 (UniProt | EBI)
NM_003018 (RefSeq)
mouse Sftpc MGI:109517 (MGI)
20389 (Entrez Gene)
Gene Tree
VISTA-Point
Chr14 36.32 cM Chr14:70520941-70524081 (-)
GRCm38
Interstitial Pneumonitis, Desquamative, Familial; DIP
20389 (NCBI Gene Model)
NP_035489 (RefSeq)
NM_011359 (RefSeq)
rat Sftpc 50683 (Entrez Gene)
Chr15 p11 P11685 (UniProt | EBI)
NM_017342 (RefSeq)
chimpanzee SFTPC 464041 (Entrez Gene)
Chr8 XP_009453249 (RefSeq)
rhesus macaque SFTPC 707696 (Entrez Gene)
Chr8 P55152 (UniProt | EBI)
NM_001042759 (RefSeq)
cattle SFTPC 282071 (Entrez Gene)
Chr8 P15783 (UniProt | EBI)
NM_174462 (RefSeq)
dog SFTPC 477385 (Entrez Gene)
Chr25 XP_534578 (RefSeq)
XM_534578 (RefSeq)
western clawed frog sftpc 100038236 (Entrez Gene)
ChrUN NP_001122132 (RefSeq)
NM_001128660 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory