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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
22681

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PLOD2 HGNC:9082 (HGNC)
5352 (Entrez Gene)
601865 (OMIM)
Chr3 q24 Chr3:146069439-146161495 (-)
GRCh38
Bruck Syndrome 2; BRKS2
O00469 (UniProt | EBI)
NM_000935 (RefSeq)
mouse Plod2 MGI:1347007 (MGI)
26432 (Entrez Gene)
Gene Tree
VISTA-Point
Chr9 48.4 cM Chr9:92542223-92608428 (+)
GRCm38
OTTMUSG00000031153 (VEGA)
OTTMUSP00000040752 (VEGA)
OTTMUST00000077171 (VEGA)
rat Plod2 300901 (Entrez Gene)
Chr8 q31 Q811A3 (UniProt | EBI)
NM_175869 (RefSeq)
chimpanzee PLOD2 460754 (Entrez Gene)
Chr3 XP_516801 (RefSeq)
rhesus macaque LOC715820 715820 (Entrez Gene)
Chr2 XP_002808385 (RefSeq)
cattle PLOD2 533642 (Entrez Gene)
Chr1 NP_001094619 (RefSeq)
NM_001101149 (RefSeq)
dog PLOD2 485702 (Entrez Gene)
Chr23 XP_542822 (RefSeq)
chicken PLOD2 424882 (Entrez Gene)
Chr9 XP_422695 (RefSeq)
western clawed frog plod2 100489636 (Entrez Gene)
ChrUN XP_002938453 (RefSeq)
zebrafish plod2 100036767 (Entrez Gene)
Chr24 NP_001007378 (RefSeq)
NM_001007377 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory