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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
22423

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL8A1 HGNC:2215 (HGNC)
1295 (Entrez Gene)
120251 (OMIM)
HGNC homology
Chr3 q12.1 Chr3:99638596-99796733 (+)
GRCh38.p7
P27658 (UniProt | EBI)
NM_020351 (RefSeq)
mouse Col8a1 MGI:88463 (MGI)
12837 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr16 34.22 cM Chr16:57624258-57754737 (-)
GRCm38
ENSMUSG00000068196 (Ensembl Gene Model)
ENSMUSP00000086745 (Ensembl)
ENSMUST00000089332 (Ensembl)
rat Col8a1 304021 (Entrez Gene)
Chr11 q12 NP_001100570 (RefSeq)
NM_001107100 (RefSeq)
chimpanzee COL8A1 460550 (Entrez Gene)
Chr3 XP_009444269 (RefSeq)
cattle COL8A1 538564 (Entrez Gene)
Chr1 NP_001094646 (RefSeq)
NM_001101176 (RefSeq)
dog COL8A1 487950 (Entrez Gene)
Chr33
chicken COL8A1 418378 (Entrez Gene)
Chr1 Q7LZR2 (UniProt | EBI)
NM_001293134 (RefSeq)
zebrafish col8a1b 562442 (Entrez Gene)
Chr22 XP_690914 (RefSeq)
frog, western clawed col8a1 100037917 (Entrez Gene)
Chr2 XP_031752479 (RefSeq)
macaque, rhesus COL8A1 100423514 (Entrez Gene)
Chr2 XP_014984924 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
02/23/2021
MGI 6.16
The Jackson Laboratory