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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2237

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SCN9A HGNC:10597 (HGNC)
6335 (Entrez Gene)
603415 (OMIM)
Chr2 q24 Chr2:166195185-166375987 (-)
GRCh38
Epileptic Encephalopathy, Early Infantile, 6; EIEE6
Erythermalgia, Primary
Generalized Epilepsy with Febrile Seizures Plus, Type 7; GEFSP7
Indifference to Pain, Congenital, Autosomal Recessive
Paroxysmal Extreme Pain Disorder
Q15858 (UniProt | EBI)
NM_002977 (RefSeq)
mouse Scn9a MGI:107636 (MGI)
20274 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 39.13 cM Chr2:66480080-66634962 (-)
GRCm38
OTTMUSG00000013103 (VEGA)
OTTMUSP00000014089 (VEGA)
OTTMUST00000031622 (VEGA)
rat Scn9a 78956 (Entrez Gene)
Chr3 q21 O08562 (UniProt | EBI)
NM_133289 (RefSeq)
chimpanzee SCN9A 459704 (Entrez Gene)
Chr2B XP_003309333 (RefSeq)
rhesus macaque SCN9A 574119 (Entrez Gene)
Chr12 XP_001101662 (RefSeq)
cattle SCN9A 533065 (Entrez Gene)
Chr2 NP_001104257 (RefSeq)
NM_001110787 (RefSeq)
dog SCN9A 100855710 (Entrez Gene)
Chr36 XP_003640221 (RefSeq)
chicken SCN9A 395946 (Entrez Gene)
Chr7 NP_001280211 (RefSeq)
NM_001293282 (RefSeq)
western clawed frog scn2a 100486750 (Entrez Gene)
ChrUN XP_002939316 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory