About   Help   FAQ
Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
223

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
select all deselect all Go
human PTCH1 HGNC:9585 (HGNC)
5727 (Entrez Gene)
601309 (OMIM)
Chr9 q22.3 Chr9:95442982-95516965 (-)
GRCh38
Basal Cell Carcinoma, Susceptibility to, 1; BCC1
Basal Cell Nevus Syndrome; BCNS
Holoprosencephaly 7; HPE7
Q13635 (UniProt | EBI)
NM_000264 (RefSeq)
mouse Ptch1 MGI:105373 (MGI)
19206 (Entrez Gene)
Gene Tree
VISTA-Point
Chr13 32.8 cM Chr13:63511533-63565520 (-)
GRCm38
Basal Cell Carcinoma, Susceptibility to, 1; BCC1
Basal Cell Nevus Syndrome; BCNS
Medulloblastoma; MDB
ENSMUSG00000021466 (Ensembl Gene Model)
ENSMUSP00000021921 (Ensembl)
ENSMUST00000021921 (Ensembl)
rat Ptch1 89830 (Entrez Gene)
Chr17 p14 NP_446018 (RefSeq)
NM_053566 (RefSeq)
chimpanzee PTCH1 465254 (Entrez Gene)
Chr9 XP_009455224 (RefSeq)
rhesus macaque PTCH1 718751 (Entrez Gene)
Chr15 XP_001111868 (RefSeq)
cattle PTCH1 520994 (Entrez Gene)
Chr8 NP_001192808 (RefSeq)
NM_001205879 (RefSeq)
dog PTCH1 484137 (Entrez Gene)
Chr1 XP_003638919 (RefSeq)
chicken PTCH1 395806 (Entrez Gene)
ChrZ Q90693 (UniProt | EBI)
NM_204960 (RefSeq)
western clawed frog ptch1 100492061 (Entrez Gene)
ChrUN XP_002935019 (RefSeq)
zebrafish ptch1 30189 (Entrez Gene)
Chr8 XP_009302341 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/11/2014
MGI 5.20
The Jackson Laboratory