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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
21542

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PGK1 HGNC:8896 (HGNC)
5230 (Entrez Gene)
311800 (OMIM)
ChrX q13.3 ChrX:78104169-78126827 (+)
GRCh38
Phosphoglycerate Kinase 1 Deficiency
P00558 (UniProt | EBI)
NM_000291 (RefSeq)
mouse Pgk1 MGI:97555 (MGI)
18655 (Entrez Gene)
Gene Tree
VISTA-Point
ChrX 47.36 cM ChrX:106187100-106203699 (+)
GRCm38
OTTMUSG00000018277 (VEGA)
OTTMUSP00000019855 (VEGA)
OTTMUST00000044166 (VEGA)
rat Pgk1 24644 (Entrez Gene)
ChrX q31 P16617 (UniProt | EBI)
NM_053291 (RefSeq)
chimpanzee PGK1 473678 (Entrez Gene)
ChrX A5A6K4 (UniProt | EBI)
NM_001135738 (RefSeq)
rhesus macaque PGK1 706325 (Entrez Gene)
ChrX NP_001182587 (RefSeq)
NM_001195658 (RefSeq)
cattle PGK1 507476 (Entrez Gene)
ChrX Xq25 Q3T0P6 (UniProt | EBI)
NM_001034299 (RefSeq)
dog PGK1 480964 (Entrez Gene)
ChrX XP_849992 (RefSeq)
chicken PGK1 395833 (Entrez Gene)
Chr4 P51903 (UniProt | EBI)
NM_204985 (RefSeq)
western clawed frog pgk1 549299 (Entrez Gene)
ChrUN NP_001016545 (RefSeq)
NM_001016545 (RefSeq)
zebrafish pgk1 406696 (Entrez Gene)
Chr21 NP_998552 (RefSeq)
NM_213387 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory