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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
21300

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SCN10A HGNC:10582 (HGNC)
6336 (Entrez Gene)
604427 (OMIM)
Chr3 p22.2 Chr3:38697346-38794010 (-)
GRCh38
Episodic Pain Syndrome, Familial, 2; FEPS2
Q9Y5Y9 (UniProt | EBI)
NM_006514 (RefSeq)
mouse Scn10a MGI:108029 (MGI)
20264 (Entrez Gene)
Gene Tree
VISTA-Point
Chr9 71.33 cM Chr9:119608456-119719032 (-)
GRCm38
ENSMUSG00000034533 (Ensembl Gene Model)
ENSMUSP00000081845 (Ensembl)
ENSMUST00000084787 (Ensembl)
rat Scn10a 29571 (Entrez Gene)
Chr8 q32 Q62968 (UniProt | EBI)
NM_017247 (RefSeq)
chimpanzee SCN10A 460274 (Entrez Gene)
Chr3 XP_009443465 (RefSeq)
rhesus macaque SCN10A 694962 (Entrez Gene)
Chr2 XP_002808374 (RefSeq)
cattle SCN10A 100299477 (Entrez Gene)
Chr22 XP_002696962 (RefSeq)
dog SCN10A 477026 (Entrez Gene)
Chr23 O46669 (UniProt | EBI)
NM_001003203 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/11/2014
MGI 5.20
The Jackson Laboratory