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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
2119

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PTPN1 HGNC:9642 (HGNC)
5770 (Entrez Gene)
176885 (OMIM)
Chr20 q13.1-q13.2 Chr20:50510321-50584762 (+)
GRCh38
Diabetes Mellitus, Noninsulin-Dependent; NIDDM
P18031 (UniProt | EBI)
NM_002827 (RefSeq)
mouse Ptpn1 MGI:97805 (MGI)
19246 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 87.99 cM Chr2:167932057-167979385 (+)
GRCm38
OTTMUSG00000015956 (VEGA)
OTTMUSP00000017024 (VEGA)
OTTMUST00000037925 (VEGA)
rat Ptpn1 24697 (Entrez Gene)
Chr3 q42 P20417 (UniProt | EBI)
NM_012637 (RefSeq)
chimpanzee PTPN1 469970 (Entrez Gene)
Chr20 XP_525354 (RefSeq)
rhesus macaque PTPN1 702016 (Entrez Gene)
Chr10 NP_001245122 (RefSeq)
NM_001258193 (RefSeq)
cattle PTPN1 508658 (Entrez Gene)
Chr13 NP_001093796 (RefSeq)
NM_001100326 (RefSeq)
dog PTPN1 477263 (Entrez Gene)
Chr24 XP_534455 (RefSeq)
chicken PTPN1 395688 (Entrez Gene)
Chr20 O13016 (UniProt | EBI)
NM_204875 (RefSeq)
western clawed frog ptpn1 549875 (Entrez Gene)
ChrUN NP_001017121 (RefSeq)
NM_001017121 (RefSeq)
zebrafish ptpn1 30081 (Entrez Gene)
Chr8 NP_570999 (RefSeq)
NM_130924 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory