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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PTPN1 HGNC:9642 (HGNC)
5770 (Entrez Gene)
176885 (OMIM)
PTPN1 (MyGene.info)
HGNC homology
Chr20 q13.13 Chr20:50510321-50584762 (+)
type 2 diabetes mellitus
P18031 (UniProt | EBI)
NM_002827 (RefSeq)
mouse Ptpn1 MGI:97805 (MGI)
19246 (Entrez Gene)
Gene Tree
HGNC homology
Chr2 87.99 cM Chr2:167932057-167979385 (+)
OTTMUSG00000015956 (VEGA)
OTTMUSP00000017024 (VEGA)
OTTMUST00000037925 (VEGA)
rat Ptpn1 24697 (Entrez Gene)
Chr3 q42 P20417 (UniProt | EBI)
NM_012637 (RefSeq)
chimpanzee PTPN1 469970 (Entrez Gene)
Chr20 XP_016793620 (RefSeq)
cattle PTPN1 508658 (Entrez Gene)
Chr13 NP_001093796 (RefSeq)
NM_001100326 (RefSeq)
dog PTPN1 477263 (Entrez Gene)
Chr24 XP_005635232 (RefSeq)
chicken PTPN1 395688 (Entrez Gene)
Chr20 O13016 (UniProt | EBI)
NM_204875 (RefSeq)
zebrafish ptpn1 30081 (Entrez Gene)
Chr8 NP_001300615 (RefSeq)
NM_130924 (RefSeq)
frog, western clawed ptpn1 549875 (Entrez Gene)
Chr10 NP_001017121 (RefSeq)
NM_001017121 (RefSeq)
macaque, rhesus PTPN1 702016 (Entrez Gene)
Chr10 NP_001245122 (RefSeq)
NM_001258193 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.12
The Jackson Laboratory