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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
21130

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human ABCA1 HGNC:29 (HGNC)
19 (Entrez Gene)
600046 (OMIM)
Chr9 q31.1 Chr9:104781002-104928246 (-)
GRCh38
ATP-Binding Cassette, Subfamily A, Member 1; ABCA1
Hypercholesterolemia, Familial
Hypoalphalipoproteinemia, Primary
Tangier Disease; TGD
O95477 (UniProt | EBI)
NM_005502 (RefSeq)
mouse Abca1 MGI:99607 (MGI)
11303 (Entrez Gene)
Gene Tree
VISTA-Point
Chr4 28.57 cM Chr4:53030787-53159895 (-)
GRCm38
Membranoproliferative Glomerulonephritis, X-Linked
Tangier Disease; TGD
OTTMUSG00000007157 (VEGA)
OTTMUSP00000007567 (VEGA)
OTTMUST00000016509 (VEGA)
rat Abca1 313210 (Entrez Gene)
Chr5 q24 NP_835196 (RefSeq)
NM_178095 (RefSeq)
chimpanzee ABCA1 464630 (Entrez Gene)
Chr9 XP_001138040 (RefSeq)
cattle ABCA1 535379 (Entrez Gene)
Chr8 NP_001019864 (RefSeq)
NM_001024693 (RefSeq)
dog ABCA1 481651 (Entrez Gene)
Chr11 XP_538773 (RefSeq)
chicken ABCA1 373945 (Entrez Gene)
ChrZ NP_989476 (RefSeq)
NM_204145 (RefSeq)
western clawed frog abca1 100491942 (Entrez Gene)
ChrUN XP_002934028 (RefSeq)
zebrafish abca1a 558924 (Entrez Gene)
Chr1 XP_005160198 (RefSeq)
abca1b 100136868 (Entrez Gene)
Chr14 NP_001108058 (RefSeq)
NM_001114586 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory