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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
21055

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SLC1A6 HGNC:10944 (HGNC)
6511 (Entrez Gene)
600637 (OMIM)
Chr19 p13.12 Chr19:14950033-15010643 (-)
GRCh38
P48664 (UniProt | EBI)
NM_005071 (RefSeq)
mouse Slc1a6 MGI:1096331 (MGI)
20513 (Entrez Gene)
Gene Tree
VISTA-Point
Chr10 39.72 cM Chr10:78780496-78814825 (+)
GRCm38
20513 (NCBI Gene Model)
O35544 (UniProt | EBI)
NM_009200 (RefSeq)
rat Slc1a6 84012 (Entrez Gene)
Chr7 q11 O35921 (UniProt | EBI)
NM_032065 (RefSeq)
cattle SLC1A6 538673 (Entrez Gene)
Chr7 NP_001092560 (RefSeq)
NM_001099090 (RefSeq)
dog SLC1A6 403749 (Entrez Gene)
Chr20 Q9N1R2 (UniProt | EBI)
NM_001003137 (RefSeq)
chicken SLC1A6 420057 (Entrez Gene)
Chr28 XP_418178 (RefSeq)
western clawed frog LOC100494506 100494506 (Entrez Gene)
ChrUN XP_002938611 (RefSeq)
zebrafish slc1a6 559270 (Entrez Gene)
Chr11 NP_001103173 (RefSeq)
NM_001109703 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory