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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CDH1 HGNC:1748 (HGNC)
999 (Entrez Gene)
192090 (OMIM)
CDH1 (gene) (MyGene.info)
HGNC homology
Chr16 q22.1 Chr16:68737290-68835542 (+)
breast cancer
endometrial cancer
ovarian cancer
prostate cancer
stomach cancer
P12830 (UniProt | EBI)
NM_001317185 (RefSeq)
mouse Cdh1 MGI:88354 (MGI)
12550 (Entrez Gene)
Gene Tree
HGNC homology
Chr8 53.18 cM Chr8:106603351-106670246 (+)
OTTMUSG00000020588 (VEGA)
OTTMUSP00000022465 (VEGA)
OTTMUST00000048788 (VEGA)
rat Cdh1 83502 (Entrez Gene)
Chr19 q12 Q9R0T4 (UniProt | EBI)
NM_031334 (RefSeq)
chimpanzee CDH1 468009 (Entrez Gene)
Chr16 XP_001168150 (RefSeq)
cattle CDH1 282637 (Entrez Gene)
Chr18 Q6R8F2 (UniProt | EBI)
NM_001002763 (RefSeq)
dog CDH1 442858 (Entrez Gene)
Chr5 F1PAA9 (UniProt | EBI)
NM_001287125 (RefSeq)
chicken CDH1 415860 (Entrez Gene)
Chr11 P08641 (UniProt | EBI)
NM_001039258 (RefSeq)
zebrafish cdh1 114424 (Entrez Gene)
Chr7 NP_571895 (RefSeq)
NM_131820 (RefSeq)
cdh31 567602 (Entrez Gene)
Chr7 XP_017212590 (RefSeq)
LOC568392 568392 (Entrez Gene)
Chr7 XP_017212587 (RefSeq)
si:busm1-71b9.3 568436 (Entrez Gene)
Chr7 XP_017212588 (RefSeq)
si:dkey-173l11.3 100329859 (Entrez Gene)
frog, western clawed LOC100485633 100485633 (Entrez Gene)
Chr4 XP_002936044 (RefSeq)
macaque, rhesus CDH1 704387 (Entrez Gene)
Chr20 XP_014981972 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.10
The Jackson Laboratory