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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
20882

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SLC1A3 HGNC:10941 (HGNC)
6507 (Entrez Gene)
600111 (OMIM)
Chr5 p13 Chr5:36606355-36688334 (+)
GRCh38
Episodic Ataxia, Type 6; EA6
P43003 (UniProt | EBI)
NM_004172 (RefSeq)
mouse Slc1a3 MGI:99917 (MGI)
20512 (Entrez Gene)
Gene Tree
VISTA-Point
Chr15 3.82 cM Chr15:8634124-8710764 (-)
GRCm38
Glaucoma, Normal Tension, Susceptibility to
OTTMUSG00000032639 (VEGA)
OTTMUSP00000043391 (VEGA)
OTTMUST00000081197 (VEGA)
rat Slc1a3 29483 (Entrez Gene)
Chr2 q16 P24942 (UniProt | EBI)
NM_019225 (RefSeq)
chimpanzee SLC1A3 461918 (Entrez Gene)
Chr5 XP_001146398 (RefSeq)
rhesus macaque SLC1A3 701109 (Entrez Gene)
Chr6 NP_001252995 (RefSeq)
NM_001266066 (RefSeq)
dog SLC1A3 403748 (Entrez Gene)
Chr4 NP_001003136 (RefSeq)
NM_001003136 (RefSeq)
chicken SLC1A3 395443 (Entrez Gene)
ChrZ XP_425011 (RefSeq)
zebrafish slc1a3a 323439 (Entrez Gene)
Chr5 NP_997805 (RefSeq)
NM_212640 (RefSeq)
slc1a3b 556181 (Entrez Gene)
Chr10 NP_001177232 (RefSeq)
NM_001190303 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory