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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
20576

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PDK1 HGNC:8809 (HGNC)
5163 (Entrez Gene)
602524 (OMIM)
Chr2 q31.1 Chr2:172555373-172625623 (+)
GRCh38
Q15118 (UniProt | EBI)
NM_002610 (RefSeq)
mouse Pdk1 MGI:1926119 (MGI)
228026 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 42.84 cM Chr2:71873224-71903858 (+)
GRCm38
OTTMUSG00000013264 (VEGA)
OTTMUSP00000014262 (VEGA)
OTTMUST00000032057 (VEGA)
rat Pdk1 116551 (Entrez Gene)
Chr3 q22 Q63065 (UniProt | EBI)
NM_053826 (RefSeq)
chimpanzee PDK1 459743 (Entrez Gene)
Chr2B XP_001147224 (RefSeq)
cattle PDK1 528655 (Entrez Gene)
Chr2 NP_001192886 (RefSeq)
NM_001205957 (RefSeq)
dog PDK1 476828 (Entrez Gene)
Chr36 XP_534032 (RefSeq)
chicken PDK1 425972 (Entrez Gene)
Chr7 NP_001026523 (RefSeq)
NM_001031352 (RefSeq)
zebrafish pdk1 555840 (Entrez Gene)
Chr9 XP_683576 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory