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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
20548

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human MMP13 HGNC:7159 (HGNC)
4322 (Entrez Gene)
600108 (OMIM)
Matrix metallopeptidase 13 (MyGene.info)
HGNC homology
Chr11 q22.2 Chr11:102942992-102955734 (-)
GRCh38.p7
spondyloepimetaphyseal dysplasia, Missouri type
P45452 (UniProt | EBI)
NM_002427 (RefSeq)
mouse Mmp13 MGI:1340026 (MGI)
17386 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr9 2.46 cM Chr9:7272514-7283331 (+)
GRCm38
ENSMUSG00000050578 (Ensembl Gene Model)
ENSMUSP00000015394 (Ensembl)
ENSMUST00000015394 (Ensembl)
rat Mmp13 171052 (Entrez Gene)
Chr8 q11 P23097 (UniProt | EBI)
NM_133530 (RefSeq)
chimpanzee MMP13 451513 (Entrez Gene)
Chr11 XP_001154361 (RefSeq)
cattle MMP13 281914 (Entrez Gene)
Chr15 O77656 (UniProt | EBI)
NM_174389 (RefSeq)
dog MMP13 403763 (Entrez Gene)
Chr5 XP_022274098 (RefSeq)
chicken MMP13 395683 (Entrez Gene)
Chr1 NP_001280019 (RefSeq)
NM_001293090 (RefSeq)
zebrafish mmp13b 100006896 (Entrez Gene)
Chr15 XP_001345507 (RefSeq)
frog, western clawed LOC100490019 100490019 (Entrez Gene)
Chr2 XP_002934971 (RefSeq)
macaque, rhesus MMP13 703980 (Entrez Gene)
Chr14 XP_001098996 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory