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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CLCN3 HGNC:2021 (HGNC)
1182 (Entrez Gene)
600580 (OMIM)
Chr4 q33 Chr4:169620521-169723187 (+)
P51790 (UniProt | EBI)
NM_001829 (RefSeq)
mouse Clcn3 MGI:103555 (MGI)
12725 (Entrez Gene)
Gene Tree
Chr8 30.9 cM Chr8:60910389-60983300 (-)
Ceroid Lipofuscinosis, Neuronal, 3; CLN3
OTTMUSG00000022342 (VEGA)
OTTMUSP00000025334 (VEGA)
OTTMUST00000053283 (VEGA)
rat Clcn3 84360 (Entrez Gene)
Chr16 p12 P51792 (UniProt | EBI)
NM_053363 (RefSeq)
chimpanzee CLCN3 471346 (Entrez Gene)
Chr4 XP_001153846 (RefSeq)
cattle CLCN3 522719 (Entrez Gene)
Chr8 NP_001179932 (RefSeq)
NM_001193003 (RefSeq)
dog CLCN3 477354 (Entrez Gene)
Chr25 NP_001295392 (RefSeq)
NM_001025619 (RefSeq)
chicken CLCN3 422432 (Entrez Gene)
Chr4 XP_004940986 (RefSeq)
western clawed frog clcn3 100216107 (Entrez Gene)
ChrUN NP_001135560 (RefSeq)
NM_001142088 (RefSeq)
zebrafish clcn3 559340 (Entrez Gene)
Chr7 XP_009301201 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.03
The Jackson Laboratory