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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
20147

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HOXD13 HGNC:5136 (HGNC)
3239 (Entrez Gene)
142989 (OMIM)
Chr2 q31.1 Chr2:176092804-176095938 (+)
GRCh38
Brachydactyly-Syndactyly Syndrome
Brachydactyly, Type D; BDD
Brachydactyly, Type E1; BDE1
Syndactyly, Type V
Synpolydactyly 1; SPD1
Vater Association
P35453 (UniProt | EBI)
NM_000523 (RefSeq)
mouse Hoxd13 MGI:96205 (MGI)
15433 (Entrez Gene)
Gene Tree
VISTA-Point
Chr2 44.13 cM Chr2:74668310-74671599 (+)
GRCm38
Synpolydactyly 1; SPD1
OTTMUSG00000013304 (VEGA)
OTTMUSP00000014292 (VEGA)
OTTMUST00000032142 (VEGA)
rat Hoxd13 288154 (Entrez Gene)
Chr3 q23 NP_001099356 (RefSeq)
NM_001105886 (RefSeq)
chimpanzee HOXD13 470586 (Entrez Gene)
Chr2B XP_525967 (RefSeq)
rhesus macaque LOC703825 703825 (Entrez Gene)
Chr12 XP_001092153 (RefSeq)
cattle EVX2 100336775 (Entrez Gene)
Chr2 XP_003585777 (RefSeq)
chicken HOXD13 396415 (Entrez Gene)
Chr7 P24344 (UniProt | EBI)
NM_205434 (RefSeq)
western clawed frog hoxd13 100498102 (Entrez Gene)
ChrUN XP_002935723 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/08/2014
MGI 5.20
The Jackson Laboratory