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HomoloGene Vertebrate Homology
Class ID
HomoloGene (Release 68, May 6, 2014)

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HOXD13 HGNC:5136 (HGNC)
3239 (Entrez Gene)
142989 (OMIM)
HOXD13 (MyGene.info)
HGNC homology
Chr2 q31.1 Chr2:176087487-176095938 (+)
brachydactyly-syndactyly syndrome
brachydactyly type D
brachydactyly type E1
VACTERL association
P35453 (UniProt | EBI)
NM_000523 (RefSeq)
mouse Hoxd13 MGI:96205 (MGI)
15433 (Entrez Gene)
Gene Tree
HGNC homology
Chr2 44.13 cM Chr2:74668310-74671599 (+)
OTTMUSG00000013304 (VEGA)
OTTMUSP00000014292 (VEGA)
OTTMUST00000032142 (VEGA)
rat Hoxd13 288154 (Entrez Gene)
Chr3 q23 NP_001099356 (RefSeq)
NM_001105886 (RefSeq)
chimpanzee HOXD13 470586 (Entrez Gene)
Chr2B XP_525967 (RefSeq)
cattle HOXD13 100336775 (Entrez Gene)
Chr2 XP_010800239 (RefSeq)
chicken HOXD13 396415 (Entrez Gene)
Chr7 P24344 (UniProt | EBI)
NM_205434 (RefSeq)
frog, western clawed hoxd13 100498102 (Entrez Gene)
Chr9 XP_002935723 (RefSeq)
macaque, rhesus HOXD13 703825 (Entrez Gene)
Chr12 XP_001092153 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
MGI 6.11
The Jackson Laboratory