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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
20132

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human SLC26A4 HGNC:8818 (HGNC)
5172 (Entrez Gene)
605646 (OMIM)
Chr7 q31 Chr7:107660635-107717809 (+)
GRCh38
Deafness, Autosomal Recessive 4, with Enlarged Vestibular Aqueduct;
Pendred Syndrome; PDS
O43511 (UniProt | EBI)
NM_000441 (RefSeq)
mouse Slc26a4 MGI:1346029 (MGI)
23985 (Entrez Gene)
Gene Tree
VISTA-Point
Chr12 13.53 cM Chr12:31519827-31559969 (-)
GRCm38
Deafness, Autosomal Recessive 4, with Enlarged Vestibular Aqueduct;
Pendred Syndrome; PDS
ENSMUSG00000020651 (Ensembl Gene Model)
ENSMUSP00000001253 (Ensembl)
ENSMUST00000001253 (Ensembl)
rat Slc26a4 29440 (Entrez Gene)
Chr6 q16 Q9R154 (UniProt | EBI)
NM_019214 (RefSeq)
chimpanzee SLC26A4 463654 (Entrez Gene)
Chr7 XP_009452244 (RefSeq)
rhesus macaque SLC26A4 699859 (Entrez Gene)
Chr3 XP_001094049 (RefSeq)
cattle SLC26A4 530241 (Entrez Gene)
Chr4 XP_608706 (RefSeq)
dog SLC26A4 483263 (Entrez Gene)
Chr18 XP_540382 (RefSeq)
chicken SLC26A4 427845 (Entrez Gene)
Chr1 XP_425419 (RefSeq)
western clawed frog LOC100145611 100145611 (Entrez Gene)
ChrUN NP_001120492 (RefSeq)
NM_001127020 (RefSeq)
LOC100485000 100485000 (Entrez Gene)
ChrUN XP_002933158 (RefSeq)
slc26a4 779605 (Entrez Gene)
ChrUN NP_001107135 (RefSeq)
NM_001113663 (RefSeq)
zebrafish slc26a4 563818 (Entrez Gene)
Chr4 NP_001159387 (RefSeq)
NM_001165915 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory