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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
20128

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human L1CAM HGNC:6470 (HGNC)
3897 (Entrez Gene)
308840 (OMIM)
ChrX q28 ChrX:153861514-153886174 (-)
GRCh38
Corpus Callosum, Partial Agenesis of, X-Linked
Hydrocephalus Due to Congenital Stenosis of Aqueduct of Sylvius; HSAS
MASA Syndrome
P32004 (UniProt | EBI)
NM_000425 (RefSeq)
mouse L1cam MGI:96721 (MGI)
16728 (Entrez Gene)
Gene Tree
VISTA-Point
ChrX 37.43 cM ChrX:73853778-73896105 (-)
GRCm38
MASA Syndrome
OTTMUSG00000016517 (VEGA)
OTTMUSP00000017798 (VEGA)
OTTMUST00000039911 (VEGA)
rat L1cam 50687 (Entrez Gene)
ChrX Q05695 (UniProt | EBI)
NM_017345 (RefSeq)
chimpanzee L1CAM 450117 (Entrez Gene)
ChrX NP_001180609 (RefSeq)
NM_001193680 (RefSeq)
rhesus macaque L1CAM 697504 (Entrez Gene)
ChrX NP_001248708 (RefSeq)
NM_001261779 (RefSeq)
cattle L1CAM 516017 (Entrez Gene)
ChrX NP_001179364 (RefSeq)
NM_001192435 (RefSeq)
dog L1CAM 492244 (Entrez Gene)
ChrX XP_549364 (RefSeq)
chicken L1CAM 396059 (Entrez Gene)
ChrUN Q03696 (UniProt | EBI)
NM_205153 (RefSeq)
western clawed frog l1cam 100124734 (Entrez Gene)
ChrUN NP_001096185 (RefSeq)
NM_001102715 (RefSeq)
zebrafish nadl1.1 30656 (Entrez Gene)
Chr23 Q90478 (UniProt | EBI)
NM_131383 (RefSeq)
nadl1.2 30634 (Entrez Gene)
Chr23 Q90479 (UniProt | EBI)
NM_131361 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory