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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
1979

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PGM1 HGNC:8905 (HGNC)
5236 (Entrez Gene)
171900 (OMIM)
Chr1 p31 Chr1:63593276-63660245 (+)
GRCh38
Congenital Disorder of Glycosylation, Type It; CDG1T
P36871 (UniProt | EBI)
NM_002633 (RefSeq)
mouse Pgm2 MGI:97565 (MGI)
72157 (Entrez Gene)
Gene Tree
VISTA-Point
Chr4 45.71 cM Chr4:99929414-99987294 (+)
GRCm38
OTTMUSG00000008026 (VEGA)
OTTMUSP00000008343 (VEGA)
OTTMUST00000018164 (VEGA)
rat Pgm1 24645 (Entrez Gene)
Chr5 q33 P38652 (UniProt | EBI)
NM_017033 (RefSeq)
chimpanzee PGM1 456908 (Entrez Gene)
Chr1 XP_003308201 (RefSeq)
rhesus macaque PGM1 699401 (Entrez Gene)
Chr1 NP_001244420 (RefSeq)
NM_001257491 (RefSeq)
dog PGM1 479545 (Entrez Gene)
Chr5 XP_536684 (RefSeq)
chicken PGM1 424691 (Entrez Gene)
Chr8 NP_001033782 (RefSeq)
NM_001038693 (RefSeq)
western clawed frog pgm1 407960 (Entrez Gene)
ChrUN NP_001001251 (RefSeq)
NM_001001251 (RefSeq)
zebrafish pgm1 394000 (Entrez Gene)
Chr6 NP_957319 (RefSeq)
NM_201025 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory