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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
18916

 
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PCDH19 HGNC:14270 (HGNC)
57526 (Entrez Gene)
300460 (OMIM)
ChrX q22.1 ChrX:100291644-100410273 (-)
GRCh38
Epileptic Encephalopathy, Early Infantile, 9; EIEE9
Q8TAB3 (UniProt | EBI)
NM_020766 (RefSeq)
mouse Pcdh19 MGI:2685563 (MGI)
279653 (Entrez Gene)
Gene Tree
VISTA-Point
ChrX 55.21 cM ChrX:133582876-133688987 (-)
GRCm38
OTTMUSG00000018675 (VEGA)
OTTMUSP00000020199 (VEGA)
OTTMUST00000044950 (VEGA)
rat Pcdh19 317183 (Entrez Gene)
ChrX q34 NP_001162600 (RefSeq)
NM_001169129 (RefSeq)
chimpanzee PCDH19 465749 (Entrez Gene)
ChrX XP_003317603 (RefSeq)
rhesus macaque PCDH19 703042 (Entrez Gene)
ChrX NP_001252617 (RefSeq)
NM_001265688 (RefSeq)
cattle PCDH19 524109 (Entrez Gene)
ChrX XP_003584345 (RefSeq)
dog LOC492013 492013 (Entrez Gene)
ChrX XP_005641608 (RefSeq)
chicken PCDH19 422263 (Entrez Gene)
Chr4 NP_001092077 (RefSeq)
NM_001098607 (RefSeq)
western clawed frog pcdh19 100494505 (Entrez Gene)
ChrUN XP_002938421 (RefSeq)
zebrafish pcdh19 555688 (Entrez Gene)
Chr14 NP_001120991 (RefSeq)
NM_001127519 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory