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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
18302

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human PTCHD1 HGNC:26392 (HGNC)
139411 (Entrez Gene)
300828 (OMIM)
HGNC homology
ChrX p22.11 ChrX:23334370-23404374 (+)
GRCh38.p7
Q96NR3 (UniProt | EBI)
NM_173495 (RefSeq)
mouse Ptchd1 MGI:2685233 (MGI)
211612 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
ChrX 72.38 cM ChrX:155573455-155623814 (-)
GRCm38
attention deficit hyperactivity disorder
ENSMUSG00000041552 (Ensembl Gene Model)
ENSMUSP00000039443 (Ensembl)
ENSMUST00000038665 (Ensembl)
rat Ptchd1 317517 (Entrez Gene)
ChrX q21 NP_001178663 (RefSeq)
NM_001191734 (RefSeq)
chimpanzee PTCHD1 465535 (Entrez Gene)
ChrX XP_016799368 (RefSeq)
cattle PTCHD1 536443 (Entrez Gene)
ChrX NP_001179810 (RefSeq)
NM_001192881 (RefSeq)
chicken PTCHD1 427995 (Entrez Gene)
Chr1 XP_425565 (RefSeq)
zebrafish ptchd1 562268 (Entrez Gene)
Chr24 XP_690754 (RefSeq)
frog, western clawed ptchd1 101731640 (Entrez Gene)
Chr2 XP_004911719 (RefSeq)
macaque, rhesus PTCHD1 699554 (Entrez Gene)
ChrX XP_001088008 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
02/23/2021
MGI 6.16
The Jackson Laboratory