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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
18260

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL6A6 HGNC:27023 (HGNC)
131873 (Entrez Gene)
616613 (OMIM)
HGNC homology
Chr3 q22.1 Chr3:130516709-130678135 (+)
GRCh38.p7
A6NMZ7 (UniProt | EBI)
NM_001102608 (RefSeq)
mouse Col6a6 MGI:2444259 (MGI)
245026 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr9 56.99 cM Chr9:105689417-105828246 (-)
GRCm38
245026 (NCBI Gene Model)
Q8C6K9 (UniProt | EBI)
NM_001102607 (RefSeq)
rat Col6a6 315979 (Entrez Gene)
Chr8 q32 XP_017459200 (RefSeq)
chimpanzee COL6A6 742913 (Entrez Gene)
Chr3 XP_016797393 (RefSeq)
cattle COL6A6 530102 (Entrez Gene)
Chr1 XP_015329636 (RefSeq)
dog COL6A6 610649 (Entrez Gene)
Chr23 XP_022264328 (RefSeq)
chicken COL6A6 428448 (Entrez Gene)
Chr2 XP_025003257 (RefSeq)
zebrafish col6a4a 564005 (Entrez Gene)
Chr16 XP_017207020 (RefSeq)
frog, western clawed col6a5 100486063 (Entrez Gene)
Chr6 XP_031759387 (RefSeq)
macaque, rhesus COL6A6 719319 (Entrez Gene)
Chr2 XP_028699519 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
09/22/2020
MGI 6.16
The Jackson Laboratory