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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
18212

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human LIN54 HGNC:25397 (HGNC)
132660 (Entrez Gene)
613367 (OMIM)
HGNC homology
Chr4 q21.22 Chr4:82924603-83012951 (-)
GRCh38.p7
Q6MZP7 (UniProt | EBI)
NM_001288996 (RefSeq)
mouse Lin54 MGI:2140902 (MGI)
231506 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr5 48.48 cM Chr5:100442033-100500649 (-)
GRCm38
231506 (NCBI Gene Model)
Q571G4 (UniProt | EBI)
NM_001115010 (RefSeq)
rat Lin54 305171 (Entrez Gene)
Chr14 p22 Q641Z1 (UniProt | EBI)
NM_001100564 (RefSeq)
chimpanzee LIN54 461208 (Entrez Gene)
Chr4 XP_009445906 (RefSeq)
cattle LIN54 100139053 (Entrez Gene)
Chr6 NP_001192410 (RefSeq)
NM_001205481 (RefSeq)
dog LIN54 478454 (Entrez Gene)
Chr32 XP_005639188 (RefSeq)
chicken LIN54 422595 (Entrez Gene)
Chr4 XP_025005753 (RefSeq)
zebrafish lin54 560688 (Entrez Gene)
Chr10 Q08CM4 (UniProt | EBI)
NM_001076567 (RefSeq)
frog, western clawed lin54 780045 (Entrez Gene)
Chr1 Q0IHV2 (UniProt | EBI)
NM_001079122 (RefSeq)
macaque, rhesus LIN54 693562 (Entrez Gene)
Chr5 XP_014993877 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory