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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
17739

 
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human TTC39A HGNC:18657 (HGNC)
22996 (Entrez Gene)
Tetratricopeptide Repeat 39A (MyGene.info)
HGNC homology
Chr1 p32.3 Chr1:51287258-51345116 (-)
GRCh38.p7
Q5SRH9 (UniProt | EBI)
NM_001297662 (RefSeq)
mouse Ttc39a MGI:2444350 (MGI)
230603 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr4 51.29 cM Chr4:109406623-109444745 (+)
GRCm38
ENSMUSG00000028555 (Ensembl Gene Model)
ENSMUSP00000102229 (Ensembl)
ENSMUST00000106618 (Ensembl)
rat LOC100910316 100910316 (Entrez Gene)
Chr5
chimpanzee TTC39A 456849 (Entrez Gene)
Chr1 XP_016818529 (RefSeq)
cattle TTC39A 527172 (Entrez Gene)
Chr3 XP_024845909 (RefSeq)
dog TTC39A 100683153 (Entrez Gene)
Chr15 XP_013974727 (RefSeq)
chicken TTC39A 424632 (Entrez Gene)
Chr8 XP_004936841 (RefSeq)
zebrafish ttc39a 100320357 (Entrez Gene)
Chr8 XP_005166977 (RefSeq)
frog, western clawed ttc39a 549528 (Entrez Gene)
Chr4 Q28D40 (UniProt | EBI)
NM_001016774 (RefSeq)
macaque, rhesus TTC39A 712187 (Entrez Gene)
Chr1 XP_002801613 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory