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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
17738

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human CLRN1 HGNC:12605 (HGNC)
7401 (Entrez Gene)
606397 (OMIM)
Chr3 q25 Chr3:150926163-150972999 (-)
GRCh38
Retinitis Pigmentosa 61; RP61
Retinitis Pigmentosa; RP
Usher Syndrome, Type IIIA; USH3A
P58418 (UniProt | EBI)
NM_052995 (RefSeq)
mouse Clrn1 MGI:2388124 (MGI)
229320 (Entrez Gene)
Gene Tree
VISTA-Point
Chr3 28.78 cM Chr3:58844028-58885340 (-)
GRCm38
Usher Syndrome, Type IIIA; USH3A
OTTMUSG00000031611 (VEGA)
OTTMUSP00000041625 (VEGA)
OTTMUST00000078294 (VEGA)
rat Clrn1 261738 (Entrez Gene)
Chr2 q31 Q8CJ58 (UniProt | EBI)
NM_153299 (RefSeq)
chimpanzee CLRN1 738468 (Entrez Gene)
Chr3 XP_001144483 (RefSeq)
rhesus macaque CLRN1 710133 (Entrez Gene)
Chr2 NP_001181307 (RefSeq)
NM_001194378 (RefSeq)
cattle CLRN1 538836 (Entrez Gene)
Chr1 NP_001179030 (RefSeq)
NM_001192101 (RefSeq)
dog CLRN1 611756 (Entrez Gene)
Chr23 XP_854563 (RefSeq)
chicken CLRN1 771718 (Entrez Gene)
Chr9 XP_001233894 (RefSeq)
western clawed frog clrn1 100497170 (Entrez Gene)
ChrUN XP_002937147 (RefSeq)
zebrafish clrn1 436944 (Entrez Gene)
Chr15 NP_001002671 (RefSeq)
NM_001002671 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/19/2014
MGI 5.19
The Jackson Laboratory