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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
1764

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human EPCAM HGNC:11529 (HGNC)
4072 (Entrez Gene)
185535 (OMIM)
Chr2 p21 Chr2:47369148-47387028 (+)
GRCh38
Colorectal Cancer, Hereditary Nonpolyposis, Type 8; HNPCC8
Diarrhea 5, with Tufting Enteropathy, Congenital; DIAR5
P16422 (UniProt | EBI)
NM_002354 (RefSeq)
mouse Epcam MGI:106653 (MGI)
17075 (Entrez Gene)
Gene Tree
VISTA-Point
Chr17 57.87 cM Chr17:87635979-87651106 (+)
GRCm38
Diarrhea 5, with Tufting Enteropathy, Congenital; DIAR5
ENSMUSG00000045394 (Ensembl Gene Model)
ENSMUSP00000061935 (Ensembl)
ENSMUST00000053577 (Ensembl)
rat Epcam 171577 (Entrez Gene)
Chr6 q12 O55159 (UniProt | EBI)
NM_138541 (RefSeq)
chimpanzee EPCAM 459214 (Entrez Gene)
Chr2A XP_009440864 (RefSeq)
rhesus macaque EPCAM 677680 (Entrez Gene)
Chr13 Q1WER1 (UniProt | EBI)
NM_001040029 (RefSeq)
cattle EPCAM 514039 (Entrez Gene)
Chr11 Q3T0L5 (UniProt | EBI)
NM_001035290 (RefSeq)
dog EPCAM 481360 (Entrez Gene)
Chr10 XP_005626295 (RefSeq)
chicken EPCAM 421292 (Entrez Gene)
Chr3 Q5F381 (UniProt | EBI)
NM_001012564 (RefSeq)
western clawed frog epcam 496567 (Entrez Gene)
ChrUN NP_001011149 (RefSeq)
NM_001011149 (RefSeq)
zebrafish epcam 406454 (Entrez Gene)
Chr13 NP_001017593 (RefSeq)
NM_001017593 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory