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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 67, Dec 12, 2012)
1658

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human IRF1 HGNC:6116 (HGNC)
3659 (Entrez Gene)
147575 (OMIM)
Chr5 q31.1 Chr5:132481609-132490773 (-)
GRCh38
Gastric Cancer
Lung Cancer
P10914 (UniProt | EBI)
NM_002198 (RefSeq)
mouse Irf1 MGI:96590 (MGI)
16362 (Entrez Gene)
Gene Tree
VISTA-Point
Chr11 32.0 cM Chr11:53770014-53778374 (+)
GRCm38
OTTMUSG00000005648 (VEGA)
OTTMUSP00000005820 (VEGA)
OTTMUST00000012563 (VEGA)
rat Irf1 24508 (Entrez Gene)
Chr10 q22 P23570 (UniProt | EBI)
NM_012591 (RefSeq)
chimpanzee IRF1 745042 (Entrez Gene)
Chr5 XP_001150404 (RefSeq)
rhesus macaque IRF1 707788 (Entrez Gene)
Chr6 NP_001253326 (RefSeq)
NM_001266397 (RefSeq)
cattle IRF1 789216 (Entrez Gene)
Chr7 Q3SZP0 (UniProt | EBI)
NM_001191261 (RefSeq)
dog IRF1 100855872 (Entrez Gene)
Chr11 XP_003639416 (RefSeq)
chicken IRF1 396384 (Entrez Gene)
Chr13 Q90876 (UniProt | EBI)
NM_205415 (RefSeq)
zebrafish irf1b 792160 (Entrez Gene)
Chr21 NP_991310 (RefSeq)
NM_205747 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
04/08/2014
MGI 5.17
The Jackson Laboratory