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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
163

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HPS1 HGNC:5163 (HGNC)
3257 (Entrez Gene)
604982 (OMIM)
Chr10 q23.1-q23.3 Chr10:98416198-98446963 (-)
GRCh38
Hermansky-Pudlak Syndrome 1; HPS1
Q92902 (UniProt | EBI)
NM_000195 (RefSeq)
mouse Hps1 MGI:2177763 (MGI)
192236 (Entrez Gene)
Gene Tree
VISTA-Point
Chr19 36.56 cM Chr19:42755105-42779978 (-)
GRCm38
Hermansky-Pudlak Syndrome 1; HPS1
Storage Pool Platelet Disease
OTTMUSG00000032530 (VEGA)
OTTMUSP00000043178 (VEGA)
OTTMUST00000080946 (VEGA)
rat Hps1 114638 (Entrez Gene)
Chr1 q54 NP_414541 (RefSeq)
NM_040669 (RefSeq)
chimpanzee HPS1 450663 (Entrez Gene)
Chr10 XP_001166248 (RefSeq)
rhesus macaque HPS1 100425623 (Entrez Gene)
Chr9 XP_002805827 (RefSeq)
dog HPS1 477791 (Entrez Gene)
Chr28 XP_534985 (RefSeq)
chicken HPS1 429879 (Entrez Gene)
Chr6 NP_001026751 (RefSeq)
NM_001031580 (RefSeq)
western clawed frog hps1 448750 (Entrez Gene)
ChrUN NP_001006903 (RefSeq)
NM_001006902 (RefSeq)
zebrafish hps1 563067 (Entrez Gene)
Chr13 NP_001032777 (RefSeq)
NM_001037688 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/26/2014
MGI 5.19
The Jackson Laboratory