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HomoloGene Vertebrate Homology
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
1626

Comparative GO Graph (mouse, human, rat)  
MGI HomoloGene Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HSPD1 HGNC:5261 (HGNC)
3329 (Entrez Gene)
118190 (OMIM)
HGNC homology
Chr2 q33.1 Chr2:197486584-197500274 (-)
GRCh38.p2
Leukodystrophy, Hypomyelinating, 4; HLD4
Spastic Paraplegia 13, Autosomal Dominant; SPG13
P10809 (UniProt | EBI)
NM_199440 (RefSeq)
mouse Hspd1 MGI:96242 (MGI)
15510 (Entrez Gene)
Gene Tree
VISTA-Point
HGNC homology
Chr1 28.01 cM Chr1:55077835-55088243 (-)
GRCm38
Spastic Paraplegia 13, Autosomal Dominant; SPG13
OTTMUSG00000021770 (VEGA)
OTTMUSP00000024365 (VEGA)
OTTMUST00000051674 (VEGA)
rat Hspd1 63868 (Entrez Gene)
Chr9 q31 P63039 (UniProt | EBI)
NM_022229 (RefSeq)
chimpanzee HSPD1 459852 (Entrez Gene)
Chr2B NP_001267080 (RefSeq)
NM_001280151 (RefSeq)
cattle HSPD1 511913 (Entrez Gene)
Chr2 P31081 (UniProt | EBI)
NM_001166608 (RefSeq)
dog HSPD1 478854 (Entrez Gene)
Chr37 P49818 (UniProt | EBI)
chicken HSPD1 424059 (Entrez Gene)
Chr7 Q5ZL72 (UniProt | EBI)
NM_001012916 (RefSeq)
zebrafish hspd1 282676 (Entrez Gene)
Chr9 NP_851847 (RefSeq)
NM_181330 (RefSeq)
frog, western clawed hspd1 100124945 (Entrez Gene)
Chr9 NP_001096355 (RefSeq)
NM_001102885 (RefSeq)
macaque, rhesus HSPD1 698024 (Entrez Gene)
Chr2 NP_001182445 (RefSeq)
NM_001195516 (RefSeq)
MGI HomoloGene Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
11/22/2016
MGI 6.06
The Jackson Laboratory