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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
1420

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human HAPLN1 HGNC:2380 (HGNC)
1404 (Entrez Gene)
115435 (OMIM)
Chr5 q14.3 Chr5:83638198-83721077 (-)
GRCh38
P10915 (UniProt | EBI)
NM_001884 (RefSeq)
mouse Hapln1 MGI:1337006 (MGI)
12950 (Entrez Gene)
Gene Tree
VISTA-Point
Chr13 45.5 cM Chr13:89540636-89611832 (+)
GRCm38
Spondyloepiphyseal Dysplasia Congenita; SEDC
ENSMUSG00000021613 (Ensembl Gene Model)
ENSMUSP00000022108 (Ensembl)
ENSMUST00000022108 (Ensembl)
rat Hapln1 29331 (Entrez Gene)
Chr2 q12 P03994 (UniProt | EBI)
NM_019189 (RefSeq)
chimpanzee HAPLN1 461765 (Entrez Gene)
Chr5 XP_001147083 (RefSeq)
rhesus macaque HAPLN1 712501 (Entrez Gene)
Chr6 XP_001112341 (RefSeq)
cattle HAPLN1 281717 (Entrez Gene)
Chr7 P55252 (UniProt | EBI)
NM_174288 (RefSeq)
dog HAPLN1 488921 (Entrez Gene)
Chr3 XP_849484 (RefSeq)
chicken HAPLN1 396475 (Entrez Gene)
ChrZ P07354 (UniProt | EBI)
NM_205482 (RefSeq)
western clawed frog hapln1 100490017 (Entrez Gene)
ChrUN XP_002933976 (RefSeq)
zebrafish hapln1b 569074 (Entrez Gene)
Chr10 XP_002663704 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory