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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
1393

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL9A1 HGNC:2217 (HGNC)
1297 (Entrez Gene)
120210 (OMIM)
Chr6 q13 Chr6:70216040-70303083 (-)
GRCh38
Epiphyseal Dysplasia, Multiple, 6; EDM6
Stickler Syndrome, Type IV; STL4
P20849 (UniProt | EBI)
NM_001851 (RefSeq)
mouse Col9a1 MGI:88465 (MGI)
12839 (Entrez Gene)
Gene Tree
VISTA-Point
Chr1 9.95 cM Chr1:24177610-24252684 (+)
GRCm38
Osteoarthritis Susceptibility 1; OS1
OTTMUSG00000022796 (VEGA)
OTTMUSP00000026168 (VEGA)
OTTMUST00000054775 (VEGA)
rat Col9a1 305104 (Entrez Gene)
Chr9 q13 P20850 (UniProt | EBI)
NM_001100842 (RefSeq)
chimpanzee COL9A1 462810 (Entrez Gene)
Chr6 XP_001136406 (RefSeq)
rhesus macaque COL9A1 714809 (Entrez Gene)
Chr4 XP_001111519 (RefSeq)
dog COL9A1 481873 (Entrez Gene)
Chr12 XP_538994 (RefSeq)
chicken COL9A1 771873 (Entrez Gene)
Chr3 P12106 (UniProt | EBI)
NM_001100911 (RefSeq)
zebrafish col9a1a 100170785 (Entrez Gene)
Chr11 NP_001124096 (RefSeq)
NM_001130624 (RefSeq)
col9a1b 406548 (Entrez Gene)
Chr13 NP_998429 (RefSeq)
NM_213264 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/23/2014
MGI 5.19
The Jackson Laboratory