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Vertebrate Homology Class
Source
Class ID
HomoloGene (Release 68, May 6, 2014)
1392

Comparative GO Graph (mouse, human, rat)  
MGI Homology Information
Species Symbol Gene Links Genetic Location Genome Coordinates
(mouse and human only)
Associated Human Diseases Sequences
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human COL6A2 HGNC:2212 (HGNC)
1292 (Entrez Gene)
120240 (OMIM)
Chr21 q22.3 Chr21:46098119-46132849 (+)
GRCh38
Bethlem Myopathy
Myosclerosis, Autosomal Recessive
Ullrich Congenital Muscular Dystrophy; UCMD
P12110 (UniProt | EBI)
NM_001849 (RefSeq)
mouse Col6a2 MGI:88460 (MGI)
12834 (Entrez Gene)
Gene Tree
VISTA-Point
Chr10 39.32 cM Chr10:76595762-76623630 (-)
GRCm38
OTTMUSG00000020488 (VEGA)
OTTMUSP00000022315 (VEGA)
OTTMUST00000048588 (VEGA)
rat Col6a2 361821 (Entrez Gene)
Chr20 p12 NP_001094211 (RefSeq)
NM_001100741 (RefSeq)
chimpanzee COL6A2 474056 (Entrez Gene)
Chr21 XP_531504 (RefSeq)
rhesus macaque COL6A2 709493 (Entrez Gene)
Chr3 XP_001099130 (RefSeq)
chicken COL6A2 396292 (Entrez Gene)
Chr7 P15988 (UniProt | EBI)
NM_205348 (RefSeq)
western clawed frog LOC100145523 100145523 (Entrez Gene)
ChrUN NP_001120436 (RefSeq)
NM_001126964 (RefSeq)
zebrafish col6a2 567771 (Entrez Gene)
Chr11 XP_696164 (RefSeq)
MGI Homology Information

MGI loads vertebrate homology data from NCBI HomoloGene, which programmatically detects homologs among the genome features of completely sequenced eukaryotic genomes (see: HomoloGene Build Procedure).

MGI includes homology for the following selected vertebrate species from HomoloGene:
 - human
 - mouse
 - rat
 - cattle
 - chicken
 - chimpanzee
 - dog
 - monkey, Rhesus
 - western clawed frog (Xenopus tropicalis)
 - zebrafish

These are a subset of the total species represented in HomoloGene Classes at NCBI.
Additional species may be present in an NCBI HomoloGene Class than appear in MGI.


Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
09/16/2014
MGI 5.19
The Jackson Laboratory